yamboo-4.2.1

Having trouble compiling the Yambo source? Using an unusual architecture? Problems with the "configure" script? This is the place to look.

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If you have trouble compiling Yambo, please make sure to list:
(1) the compiler (vendor and release: e.g. intel 10.1)
(2) the architecture (e.g. 64-bit IBM SP5)
(3) if the problems occur compiling in serial/in parallel
(4) the version of Yambo (revision number/major release version)
(5) the relevant compiler error message

yamboo-4.2.1

Postby sky-zhou » Mon Feb 19, 2018 12:41 pm

I am compling yamboo on a natinoal supercomputer, but always some errors. The error report is
"
configure: error: cannot find sources (include/netcdf.h) in . or ..
make[1]: *** [configure-stamp] Error 1
make[1]: Leaving directory `/ccc/work/cont003/gen0544/zhoujg/work-yamboo/yambo-4.2.1/lib/netcdf'
make: *** [ext-libs] Error 2
"
My configure commend is
"
./configure FC=ifort MPIF77=mpif90 F77=ifort CC=icc --with-fft-path="/ccc/products/fftw3-3.3.4/default" --with-fftw3="/usr/local/fftw3-3.3.4/" --with-lapack-libs="-L/ccc/products/intel-14.0.3.174/default/14.0.3.174/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core" --with-blas-libs="-L/ccc/products/intel-14.0.3.174/default/14.0.3.174/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core"
"

Could some one tell me how to solve this problem?

Many thanks!

Sky
Jianqiang Sky ZHOU
Institut des NanoSciences de Paris (INSP)
European Theoretical Spectroscopy Facility
sky-zhou
 
Posts: 8
Joined: Mon Feb 19, 2018 12:32 pm

Re: yamboo-4.2.1

Postby Daniele Varsano » Mon Feb 19, 2018 1:30 pm

Dear Sky,
can you please upload your config.log file?

Best,
Daniele
Dr. Daniele Varsano
S3-CNR Institute of Nanoscience and MaX Center, Italy
MaX - Materials design at the Exascale
http://www.nano.cnr.it
http://www.max-centre.eu/
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Re: yamboo-4.2.1

Postby sky-zhou » Mon Feb 19, 2018 1:42 pm

Daniele Varsano wrote:Dear Sky,
can you please upload your config.log file?

Best,
Daniele


Dear Daniele,

Here attached it is the config.log file.

Many thanks!

Sky
You do not have the required permissions to view the files attached to this post.
Jianqiang Sky ZHOU
Institut des NanoSciences de Paris (INSP)
European Theoretical Spectroscopy Facility
sky-zhou
 
Posts: 8
Joined: Mon Feb 19, 2018 12:32 pm

Re: yamboo-4.2.1

Postby Daniele Varsano » Mon Feb 19, 2018 2:16 pm

Dear Sky,
I can't find anything wrong with your configuration, besides the fact you are using a quite old version of the intel compilers.
Just a question, have you tried previous compilation with different options? In this case, have you done a make clean_all before recompiling?
In this case, you can do make clean_all configure again and try to recompile.

Best,
Daniele
Dr. Daniele Varsano
S3-CNR Institute of Nanoscience and MaX Center, Italy
MaX - Materials design at the Exascale
http://www.nano.cnr.it
http://www.max-centre.eu/
User avatar
Daniele Varsano
 
Posts: 1950
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Re: yamboo-4.2.1

Postby sky-zhou » Mon Feb 19, 2018 2:27 pm

Dear Daniele,

I am using the default inter compiler in this national computer "intel/14.0.3.174(default)". Every time I try a different compile process, I do "make clean" first, instead the "make clean_all" you have suggested... I will try again and tell you what happens.

Thank you very much for your fast reply!

Cheers,

Sky


Daniele Varsano wrote:Dear Sky,
I can't find anything wrong with your configuration, besides the fact you are using a quite old version of the intel compilers.
Just a question, have you tried previous compilation with different options? In this case, have you done a make clean_all before recompiling?
In this case, you can do make clean_all configure again and try to recompile.

Best,
Daniele
Jianqiang Sky ZHOU
Institut des NanoSciences de Paris (INSP)
European Theoretical Spectroscopy Facility
sky-zhou
 
Posts: 8
Joined: Mon Feb 19, 2018 12:32 pm

Re: yamboo-4.2.1

Postby sky-zhou » Mon Feb 19, 2018 3:27 pm

Dear Daniele,

After "make clean_all" the code is compiled successfully! Thank you very much for your help!

All the best,
Sky


Daniele Varsano wrote:Dear Sky,
I can't find anything wrong with your configuration, besides the fact you are using a quite old version of the intel compilers.
Just a question, have you tried previous compilation with different options? In this case, have you done a make clean_all before recompiling?
In this case, you can do make clean_all configure again and try to recompile.

Best,
Daniele
Jianqiang Sky ZHOU
Institut des NanoSciences de Paris (INSP)
European Theoretical Spectroscopy Facility
sky-zhou
 
Posts: 8
Joined: Mon Feb 19, 2018 12:32 pm

Re: yamboo-4.2.1

Postby Daniele Varsano » Mon Feb 19, 2018 3:48 pm

Great!
Have fun with Yambo!

Best,
Daniele
Dr. Daniele Varsano
S3-CNR Institute of Nanoscience and MaX Center, Italy
MaX - Materials design at the Exascale
http://www.nano.cnr.it
http://www.max-centre.eu/
User avatar
Daniele Varsano
 
Posts: 1950
Joined: Tue Mar 17, 2009 2:23 pm


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